If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ), 'gf_id' => 'HOM05D000778', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000778' ), 'data_identifier' => 'HOM05D000778', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000778', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06040' => 'bna', 'A01p32000' => 'bna', 'A03p19800' => 'bna', 'A03p29860' => 'bna', 'A03p33750' => 'bna', 'A03p61350' => 'bna', 'A05p09820' => 'bna', 'A05p25590' => 'bna', 'A05p42900' => 'bna', 'A06p38020' => 'bna', 'A08p18220' => 'bna', 'A09p26560' => 'bna', 'Aa31LG11G8650' => 'aar', 'Aa31LG2G12320' => 'aar', 'Aa31LG2G18250' => 'aar', 'Aa31LG5G15050' => 'aar', 'Aa31LG5G21020' => 'aar', 'Aa31LG8G9570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3832' => 'aag', 'Actinidia03861' => 'ach', 'Actinidia03969' => 'ach', 'Actinidia04476' => 'ach', 'Actinidia07950' => 'ach', 'Actinidia13235' => 'ach', 'Actinidia14604' => 'ach', 'Actinidia15671' => 'ach', 'Actinidia15672' => 'ach', 'Actinidia17462' => 'ach', 'Actinidia22345' => 'ach', 'Actinidia37771' => 'ach', 'Ah.02g116100' => 'amhyb', 'Ah.06g192060' => 'amhyb', 'Ah.13g065970' => 'amhyb', 'AL1G64870' => 'aly', 'AL3G14670' => 'aly', 'AL3G37540' => 'aly', 'AL4G31980' => 'aly', 'AL6G40660' => 'aly', 'Aqoxy1G00588' => 'aox', 'Aqoxy2G03567' => 'aox', 'Aqoxy7G03680' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6NG7WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7M06WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0K4TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8ZNK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA9INV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKB63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K99CPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KVAQ3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF78WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAET17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVQ4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RX6B2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMN1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMEH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC2T0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG0Z4E' => 'arhy', 'AT1G54460' => 'ath', 'AT2G25480' => 'ath', 'AT2G35880' => 'ath', 'AT3G04630' => 'ath', 'AT3G23090' => 'ath', 'AT4G32330' => 'ath', 'AT5G28646' => 'ath', 'ATR0665G281' => 'atr', 'ATR0697G012' => 'atr', 'ATR1120G030' => 'atr', 'Atru.chr2.846' => 'acertr', 'Atru.chr2.856' => 'acertr', 'Atru.chr4.2227' => 'acertr', 'Atru.chr7.2424' => 'acertr', 'Atru.chr8.1297' => 'acertr', 'AUR62001058' => 'cqu', 'AUR62002248' => 'cqu', 'AUR62004894' => 'cqu', 'AUR62012393' => 'cqu', 'AUR62015458' => 'cqu', 'AUR62031511' => 'cqu', 'BcaB01g01777' => 'bca', 'BcaB01g02610' => 'bca', 'BcaB01g02611' => 'bca', 'BcaB01g02612' => 'bca', 'BcaB01g03873' => 'bca', 'BcaB02g09392' => 'bca', 'BcaB03g12742' => 'bca', 'BcaB04g19311' => 'bca', 'BcaB04g20472' => 'bca', 'BcaB06g26434' => 'bca', 'BcaB06g26435' => 'bca', 'BcaB06g26438' => 'bca', 'BcaB06g28887' => 'bca', 'BcaC01g01029' => 'bca', 'BcaC01g04359' => 'bca', 'BcaC01g04572' => 'bca', 'BcaC01g05696' => 'bca', 'BcaC02g11700' => 'bca', 'BcaC04g21264' => 'bca', 'BcaC05g27975' => 'bca', 'BcaC05g29919' => 'bca', 'BcaC05g30182' => 'bca', 'BcaC09g52015' => 'bca', 'BcaC09g52016' => 'bca', 'BcaNung01724' => 'bca', 'BcaNung02103' => 'bca', 'BcaNung03589' => 'bca', 'BcaNung03951' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00010' => 'bna', 'BolC1t00659H' => 'bol', 'BolC1t04049H' => 'bol', 'BolC3t14711H' => 'bol', 'BolC3t15923H' => 'bol', 'BolC3t16394H' => 'bol', 'BolC3t21047H' => 'bol', 'BolC4t22862H' => 'bol', 'BolC5t32726H' => 'bol', 'BolC5t34917H' => 'bol', 'BolC7t44557H' => 'bol', 'BolC7t46362H' => 'bol', 'BolC9t56203H' => 'bol', 'BraA01t00569Z' => 'bra', 'BraA01t03325Z' => 'bra', 'BraA03t11232Z' => 'bra', 'BraA03t12176Z' => 'bra', 'BraA03t12548Z' => 'bra', 'BraA03t15180Z' => 'bra', 'BraA05t19934Z' => 'bra', 'BraA05t21441Z' => 'bra', 'BraA05t22963Z' => 'bra', 'BraA06t26717Z' => 'bra', 'BraA08t33774Z' => 'bra', 'BraA08t33781Z' => 'bra', 'BraA09t38230Z' => 'bra', 'C01p06640' => 'bna', 'C01p40980' => 'bna', 'C01p41000' => 'bna', 'C03p23090' => 'bna', 'C03p36130' => 'bna', 'C03p41050' => 'bna', 'C04p12180' => 'bna', 'C04p64870' => 'bna', 'C05p39810' => 'bna', 'C05p62630' => 'bna', 'C07p40190' => 'bna', 'C07p59200' => 'bna', 'C09p33690' => 'bna', 'CAN.G1007.12' => 'can', 'CAN.G118.8' => 'can', 'CAN.G1230.7' => 'can', 'CAN.G134.72' => 'can', 'CAN.G4170.1' => 'can', 'CAN.G5544.1' => 'can', 'CAN.G674.21' => 'can', 'CAN.G911.9' => 'can', 'CANSAT25G2802' => 'cansat', 'CANSAT54G1766' => 'cansat', 'CANSAT64G0079' => 'cansat', 'CANSAT78G0933' => 'cansat', 'CARHR055580' => 'chi', 'CARHR078840' => 'chi', 'CARHR099000' => 'chi', 'CARHR130130' => 'chi', 'CARHR185260' => 'chi', 'CARHR240230' => 'chi', 'Carub.0002s0937' => 'cru', 'Carub.0003s0379' => 'cru', 'Carub.0003s2326' => 'cru', 'Carub.0004s1763' => 'cru', 'Carub.0006s2592' => 'cru', 'Carub.0007s0825' => 'cru', 'Ca_04605_v3' => 'car', 'Ca_09431_v3' => 'car', 'Ca_09837_v3' => 'car', 'Ca_10037_v3' => 'car', 'Ca_11666_v3' => 'car', 'Ca_13028_v3' => 'car', 'Ca_15736_v3' => 'car', 'Ca_29668_v3' => 'car', 'Cc02_g30920' => 'ccan', 'Cc03_g04880' => 'ccan', 'Cc06_g06890' => 'ccan', 'Cc08_g00650' => 'ccan', 'CDE04G1512' => 'cde', 'CDE04G3199' => 'cde', 'CDE06G1475' => 'cde', 'CDE06G1760' => 'cde', 'CDE07G0965' => 'cde', 'CDE07G1773' => 'cde', 'Cfa013147' => 'cfa', 'Cfa020080' => 'cfa', 'Ciclev10003186m.g' => 'ccl', 'Ciclev10005113m.g' => 'ccl', 'Ciclev10008193m.g' => 'ccl', 'Ciclev10008326m.g' => 'ccl', 'Ciclev10012108m.g' => 'ccl', 'Ciclev10028698m.g' => 'ccl', 'CiPaw.01G190200' => 'cil', 'CiPaw.02G116100' => 'cil', 'CiPaw.03G245500' => 'cil', 'CiPaw.06G011900' => 'cil', 'CiPaw.07G068900' => 'cil', 'CiPaw.07G223100' => 'cil', 'CiPaw.08G011300' => 'cil', 'CiPaw.08G121800' => 'cil', 'CiPaw.09G023300' => 'cil', 'CiPaw.10G019900' => 'cil', 'ClCG00G000500' => 'cla', 'ClCG00G001370' => 'cla', 'ClCG02G016800' => 'cla', 'ClCG05G016890' => 'cla', 'ClCG06G006750' => 'cla', 'ClCG10G018060' => 'cla', 'COL.COLO4_15381' => 'col', 'COL.COLO4_15796' => 'col', 'COL.COLO4_18857' => 'col', 'COL.COLO4_29512' => 'col', 'Cpa.g.sc222.23' => 'cpa', 'Cpa.g.sc58.50' => 'cpa', 'Cpa.g.sc736.4' => 'cpa', 'Cpa.g.sc750.3' => 'cpa', 'CsaV3_1G045490' => 'csa', 'CsaV3_2G003950' => 'csa', 'CsaV3_2G013020' => 'csa', 'CsaV3_3G038240' => 'csa', 'CsaV3_3G046420' => 'csa', 'CSS0005785' => 'camsi', 'CSS0010513' => 'camsi', 'CSS0016911' => 'camsi', 'CSS0019647' => 'camsi', 'CSS0021475' => 'camsi', 'CSS0022433' => 'camsi', 'CSS0025204' => 'camsi', 'CSS0027691' => 'camsi', 'CSS0030513' => 'camsi', 'CSS0034329' => 'camsi', 'CSS0035337' => 'camsi', 'CSS0035596' => 'camsi', 'CSS0044259' => 'camsi', 'CSS0044463' => 'camsi', 'DCAR_003097' => 'dca', 'DCAR_006217' => 'dca', 'DCAR_006641' => 'dca', 'DCAR_009072' => 'dca', 'DCAR_009073' => 'dca', 'DCAR_013455' => 'dca', 'DCAR_016912' => 'dca', 'DCAR_020683' => 'dca', 'DCAR_025324' => 'dca', 'DCAR_027280' => 'dca', 'DCAR_030724' => 'dca', 'Dinv08651' => 'din', 'Dinv11888' => 'din', 'Dinv17935' => 'din', 'Dinv30140' => 'din', 'Dinv41497' => 'din', 'Dinv44636' => 'din', 'Duzib093G1343' => 'dzi', 'Duzib106G0680' => 'dzi', 'Duzib106G2033' => 'dzi', 'Duzib128G1416' => 'dzi', 'Duzib128G1870' => 'dzi', 'Duzib150G1013' => 'dzi', 'Duzib151G0074' => 'dzi', 'Duzib168G0519' => 'dzi', 'Duzib177G0114' => 'dzi', 'Duzib212G0041' => 'dzi', 'ECA233G1448' => 'eca', 'ECA233G1996' => 'eca', 'ECA238G1406' => 'eca', 'ECA238G1457' => 'eca', 'ECA240G2079' => 'eca', 'ECA246G4794' => 'eca', 'ECA248G0938' => 'eca', 'EL10Ac2g04228' => 'bvu', 'EL10Ac3g05887' => 'bvu', 'EL10Ac4g09080' => 'bvu', 'EL10Ac5g11820' => 'bvu', 'Eucgr.A02553' => 'egr', 'Eucgr.C01741' => 'egr', 'Eucgr.C02774' => 'egr', 'Eucgr.H00191' => 'egr', 'Eucgr.H03155' => 'egr', 'Eucgr.H04316' => 'egr', 'FAN02G0507' => 'fan', 'FAN02G1645' => 'fan', 'FAN05G1121' => 'fan', 'FAN05G1731' => 'fan', 'FAN05G2927' => 'fan', 'FAN05G5635' => 'fan', 'FAN09G1711' => 'fan', 'FAN09G3334' => 'fan', 'FAN12G4191' => 'fan', 'FAN14G1742' => 'fan', 'FAN14G3360' => 'fan', 'FAN14G5396' => 'fan', 'FAN15G3123' => 'fan', 'FAN17G3064' => 'fan', 'FAN20G1702' => 'fan', 'FAN22G0182' => 'fan', 'FAN24G1223' => 'fan', 'FAN27G0799' => 'fan', 'FvH4_2g29090' => 'fve', 'FvH4_4g02740' => 'fve', 'FvH4_6g02600' => 'fve', 'FvH4_6g20850' => 'fve', 'Glyma.02G192600' => 'gma', 'Glyma.03G204200' => 'gma', 'Glyma.03G248000' => 'gma', 'Glyma.04G066800' => 'gma', 'Glyma.06G068300' => 'gma', 'Glyma.10G084200' => 'gma', 'Glyma.10G163400' => 'gma', 'Glyma.10G185000' => 'gma', 'Glyma.14G116600' => 'gma', 'Glyma.17G211100' => 'gma', 'Glyma.19G201500' => 'gma', 'Glyma.19G246000' => 'gma', 'Glyma.20G205400' => 'gma', 'Glyma.20G226000' => 'gma', 'Gohir.A01G199900' => 'ghi', 'Gohir.A06G098218' => 'ghi', 'Gohir.A07G028100' => 'ghi', 'Gohir.A08G216100' => 'ghi', 'Gohir.A10G113800' => 'ghi', 'Gohir.A11G249800' => 'ghi', 'Gohir.A11G299000' => 'ghi', 'Gohir.A13G169200' => 'ghi', 'Gohir.A13G181500' => 'ghi', 'Gohir.D01G189900' => 'ghi', 'Gohir.D05G057100' => 'ghi', 'Gohir.D06G100200' => 'ghi', 'Gohir.D07G032200' => 'ghi', 'Gohir.D08G232650' => 'ghi', 'Gohir.D08G233100' => 'ghi', 'Gohir.D10G153300' => 'ghi', 'Gohir.D11G259700' => 'ghi', 'Gohir.D11G313800' => 'ghi', 'Gohir.D13G174700' => 'ghi', 'Gohir.D13G189300' => 'ghi', 'Gorai.002G233700' => 'gra', 'Gorai.004G247600' => 'gra', 'Gorai.007G278600' => 'gra', 'Gorai.007G345100' => 'gra', 'Gorai.009G058200' => 'gra', 'Gorai.010G115100' => 'gra', 'Gorai.011G171200' => 'gra', 'Gorai.013G185900' => 'gra', 'Gorai.013G214800' => 'gra', 'GSVIVG01015552001' => 'vvi', 'GSVIVG01018122001' => 'vvi', 'GSVIVG01035857001' => 'vvi', 'GSVIVG01036233001' => 'vvi', 'HanXRQChr01g0026131' => 'han', 'HanXRQChr02g0050231' => 'han', 'HanXRQChr02g0052901' => 'han', 'HanXRQChr03g0087041' => 'han', 'HanXRQChr03g0092411' => 'han', 'HanXRQChr05g0158371' => 'han', 'HanXRQChr07g0196611' => 'han', 'HanXRQChr12g0379831' => 'han', 'HanXRQChr13g0398691' => 'han', 'HanXRQChr13g0402941' => 'han', 'HanXRQChr13g0424491' => 'han', 'HanXRQChr14g0446611' => 'han', 'HanXRQChr14g0453281' => 'han', 'Haze_04380' => 'cav', 'Haze_11302' => 'cav', 'Haze_11304' => 'cav', 'Haze_20112' => 'cav', 'Haze_21521' => 'cav', 'Hma1.2p1_0000F.1_g000070' => 'hma', 'Hma1.2p1_0043F.1_g025780' => 'hma', 'Hma1.2p1_0650F.1_g195440' => 'hma', 'Hma1.2p1_0969F.1_g242590' => 'hma', 'Hma1.2p1_3492F.1_g336400' => 'hma', 'HPP92_007978' => 'vpl', 'HPP92_011042' => 'vpl', 'HPP92_016638' => 'vpl', 'HPP92_016657' => 'vpl', 'HPP92_024859' => 'vpl', 'Hund04530' => 'sun', 'Hund04561' => 'sun', 'Hund06946' => 'sun', 'Hund10830' => 'sun', 'Hund14988' => 'sun', 'Hund22133' => 'sun', 'Hund25807' => 'sun', 'Lalb_Chr02g0148931' => 'lal', 'Lalb_Chr02g0150401' => 'lal', 'Lalb_Chr04g0262201' => 'lal', 'Lalb_Chr04g0262211' => 'lal', 'Lalb_Chr06g0168111' => 'lal', 'Lalb_Chr08g0244091' => 'lal', 'Lalb_Chr11g0063731' => 'lal', 'Lalb_Chr15g0076031' => 'lal', 'Lalb_Chr18g0043961' => 'lal', 'Lalb_Chr20g0111241' => 'lal', 'Lalb_Chr21g0311041' => 'lal', 'Lalb_Chr21g0312291' => 'lal', 'Lalb_Chr22g0361471' => 'lal', 'Lalb_Chr23g0268521' => 'lal', 'Lalb_Chr24g0402171' => 'lal', 'Lalb_Chr25g0287891' => 'lal', 'Lj1g0021413' => 'lja', 'Lj1g0022055' => 'lja', 'Lj1g0026823' => 'lja', 'Lj3A779T31' => 'lonja', 'Lj3C794G17' => 'lonja', 'Lj3g0016584' => 'lja', 'Lj5g0005651' => 'lja', 'Lj5g0007725' => 'lja', 'Lj5g0015391' => 'lja', 'Lj5g0016838' => 'lja', 'Lj6A746T52' => 'lonja', 'Lj6C657T12' => 'lonja', 'Lj7A585T40' => 'lonja', 'Lj7A722G43' => 'lonja', 'Lj8C706T3' => 'lonja', 'Lsat_1_v5_gn_1_58580' => 'lsa', 'Lsat_1_v5_gn_2_101800' => 'lsa', 'Lsat_1_v5_gn_2_64441' => 'lsa', 'Lsat_1_v5_gn_3_123101' => 'lsa', 'Lsat_1_v5_gn_5_38041' => 'lsa', 'Lsat_1_v5_gn_6_21500' => 'lsa', 'Lsat_1_v5_gn_6_34641' => 'lsa', 'Manes.03G014900' => 'mes', 'Manes.03G168600' => 'mes', 'Manes.08G036400' => 'mes', 'Manes.08G136500' => 'mes', 'Manes.09G042700' => 'mes', 'Manes.09G151100' => 'mes', 'Manes.15G037100' => 'mes', 'Manes.16G121800' => 'mes', 'Mapoly0057s0061' => 'mpo', 'MBI01_g36595_MAGBIO' => 'mbi', 'MBI03_g19574_MAGBIO' => 'mbi', 'MBI03_g20461_MAGBIO' => 'mbi', 'MBI04_g29346_MAGBIO' => 'mbi', 'MBI04_g38140_MAGBIO' => 'mbi', 'MBI05_g28095_MAGBIO' => 'mbi', 'MBI11_g34847_MAGBIO' => 'mbi', 'MBI14_g26426_MAGBIO' => 'mbi', 'MD03G1148400' => 'mdo', 'MD04G1226800' => 'mdo', 'MD08G1150300' => 'mdo', 'MD10G1012100' => 'mdo', 'MD12G1044500' => 'mdo', 'MD12G1243800' => 'mdo', 'MD13G1207700' => 'mdo', 'MD14G1043400' => 'mdo', 'MD15G1125300' => 'mdo', 'MD16G1209200' => 'mdo', 'Medtr1g012530' => 'mtr', 'Medtr1g055085' => 'mtr', 'Medtr1g075310' => 'mtr', 'Medtr1g080690' => 'mtr', 'Medtr3g107050' => 'mtr', 'Medtr7g106750' => 'mtr', 'MELO3C003697.2' => 'cme', 'MELO3C004396.2' => 'cme', 'MELO3C009566.2' => 'cme', 'MELO3C024656.2' => 'cme', 'MELO3C026782.2' => 'cme', 'Migut.A00044' => 'egut', 'Migut.B01112' => 'egut', 'Migut.E01800' => 'egut', 'Migut.G00438' => 'egut', 'Migut.I00497' => 'egut', 'Migut.J00737' => 'egut', 'Migut.L00990' => 'egut', 'Migut.L01849' => 'egut', 'Migut.N00241' => 'egut', 'Migut.N01920' => 'egut', 'MSTRG.10417' => 'ama', 'MSTRG.11618' => 'ama', 'MSTRG.1723' => 'ama', 'MSTRG.26006' => 'ama', 'MSTRG.26585' => 'ama', 'MSTRG.5916' => 'ama', 'MSTRG.9923' => 'ama', 'Nitab4.5_0000109g0300' => 'nta', 'Nitab4.5_0000209g0190' => 'nta', 'Nitab4.5_0000220g0130' => 'nta', 'Nitab4.5_0000525g0260' => 'nta', 'Nitab4.5_0000721g0190' => 'nta', 'Nitab4.5_0001418g0060' => 'nta', 'Nitab4.5_0001918g0080' => 'nta', 'Nitab4.5_0002084g0040' => 'nta', 'Nitab4.5_0002247g0020' => 'nta', 'Nitab4.5_0006708g0020' => 'nta', 'Nitab4.5_0008266g0010' => 'nta', 'Nitab4.5_0010873g0010' => 'nta', 'Nitab4.5_0012146g0020' => 'nta', 'Nitab4.5_0018760g0010' => 'nta', 'Nn2g12061' => 'nnu', 'Nn2g14388' => 'nnu', 'Nn3g19543' => 'nnu', 'Nn6g34603' => 'nnu', 'Nn8g39478' => 'nnu', 'Oeu003586.1' => 'oeu', 'Oeu008797.1' => 'oeu', 'Oeu014608.1' => 'oeu', 'Oeu016448.1' => 'oeu', 'Oeu038461.1' => 'oeu', 'Oeu043030.1' => 'oeu', 'Oeu044681.1' => 'oeu', 'Oeu051867.1' => 'oeu', 'Oeu058124.1' => 'oeu', 'Oeu058886.1' => 'oeu', 'Oeu060155.1' => 'oeu', 'Oeu060156.1' => 'oeu', 'Os02g0200800' => 'osa', 'Os03g0799100' => 'osa', 'Os06g0606800' => 'osa', 'Os07g0185432' => 'osa', 'Os11g0571900' => 'osa', 'Os11g0592600' => 'osa', 'Peaxi162Scf00203g00812' => 'pax', 'Peaxi162Scf00282g00075' => 'pax', 'Peaxi162Scf00325g00811' => 'pax', 'Peaxi162Scf00643g00317' => 'pax', 'Peaxi162Scf00687g00057' => 'pax', 'Peaxi162Scf00785g00316' => 'pax', 'Peaxi162Scf00813g00024' => 'pax', 'PGR004G1927' => 'pgr', 'PGR004G2624' => 'pgr', 'PGR031G1988' => 'pgr', 'PGR044G0050' => 'pgr', 'PGR044G0138' => 'pgr', 'PGR086G0002' => 'pgr', 'PGR142G0106' => 'pgr', 'PGSC0003DMG400015116' => 'stu', 'PGSC0003DMG400015849' => 'stu', 'PGSC0003DMG400016321' => 'stu', 'PGSC0003DMG400021339' => 'stu', 'PGSC0003DMG400024132' => 'stu', 'PGSC0003DMG400027517' => 'stu', 'PGSC0003DMG400028228' => 'stu', 'Phvul.001G051200' => 'pvu', 'Phvul.001G197800' => 'pvu', 'Phvul.006G102900' => 'pvu', 'Phvul.007G188500' => 'pvu', 'Phvul.007G266000' => 'pvu', 'Phvul.009G093100' => 'pvu', 'Potri.005G055900' => 'ptr', 'Potri.006G200400' => 'ptr', 'Potri.006G254400' => 'ptr', 'Potri.008G162800' => 'ptr', 'Potri.010G076200' => 'ptr', 'Potri.013G042800' => 'ptr', 'Potri.016G066600' => 'ptr', 'Potri.018G027500' => 'ptr', 'Pp3c11_11860' => 'ppa', 'Pp3c19_15920' => 'ppa', 'Pp3c1_11980' => 'ppa', 'Pp3c20_13190' => 'ppa', 'Pp3c21_13710' => 'ppa', 'Pp3c22_17190' => 'ppa', 'Pp3c23_3390' => 'ppa', 'Pp3c23_8650' => 'ppa', 'Pp3c23_8670' => 'ppa', 'Pp3c24_16930' => 'ppa', 'Pp3c24_4900' => 'ppa', 'Pp3c2_24850' => 'ppa', 'Pp3c8_17230' => 'ppa', 'Pp3c8_8040' => 'ppa', 'Prupe.1G031100' => 'ppe', 'Prupe.1G480800' => 'ppe', 'Prupe.6G345500' => 'ppe', 'Prupe.7G090700' => 'ppe', 'Psat0ss25160g0080' => 'psa', 'Psat3g028040' => 'psa', 'Psat5g028760' => 'psa', 'Psat6g029160' => 'psa', 'Psat6g118600' => 'psa', 'Psat6g125400' => 'psa', 'Psat6g144720' => 'psa', 'PSO017G3442' => 'pso', 'PSO017G4047' => 'pso', 'PSO063G7294' => 'pso', 'PSO170G2621' => 'pso', 'PSO210G0996' => 'pso', 'PSO339G2773' => 'pso', 'PSO339G5199' => 'pso', 'PSO384G2510' => 'pso', 'PSO384G4839' => 'pso', 'PSO832G1936' => 'pso', 'QL02p021758' => 'qlo', 'QL02p088836' => 'qlo', 'QL03p027737' => 'qlo', 'QL06p015791' => 'qlo', 'QL07p026771' => 'qlo', 'QL93p0113_0005' => 'qlo', 'RcHm_v2.0_Chr3g0450511' => 'rch', 'RcHm_v2.0_Chr3g0477191' => 'rch', 'RcHm_v2.0_Chr4g0390601' => 'rch', 'RcHm_v2.0_Chr6g0297971' => 'rch', 'Rhsim02G0200700' => 'rsi', 'Rhsim03G0062900' => 'rsi', 'Rhsim07G0074700' => 'rsi', 'Rhsim07G0157700' => 'rsi', 'Sabra06G0154300' => 'sbr', 'Sabra06G0198800' => 'sbr', 'Sabra08G0124300' => 'sbr', 'Sabra10G0032600' => 'sbr', 'Sabra13G0039200' => 'sbr', 'Sabra16G0068000' => 'sbr', 'Sabra18G0029800' => 'sbr', 'SalBow1G2267' => 'sbo', 'SalBow1G6066' => 'sbo', 'SalBow3G1273' => 'sbo', 'SalBow4G1089' => 'sbo', 'SalBow4G1516' => 'sbo', 'SalBow4G2427' => 'sbo', 'SalBow5G4642' => 'sbo', 'SalBow8G3618' => 'sbo', 'Sc09g0004010' => 'sci', 'Sc09g0008270' => 'sci', 'Sc13g0005060' => 'sci', 'Sc20g0000460' => 'sci', 'Sc22g0003130' => 'sci', 'Sc23g0006730' => 'sci', 'Sed0001287' => 'sed', 'Sed0001696' => 'sed', 'Sed0004657' => 'sed', 'Sed0006899' => 'sed', 'Sed0009235' => 'sed', 'Sed0011565' => 'sed', 'Sed0016343' => 'sed', 'Sed0016899' => 'sed', 'Sed0021020' => 'sed', 'Sed0026206' => 'sed', 'SEGI_05784' => 'sgi', 'SEGI_11730' => 'sgi', 'SEGI_22476' => 'sgi', 'SEGI_24561' => 'sgi', 'SEGI_25853' => 'sgi', 'SEGI_34158' => 'sgi', 'SGA_v2.0_scaffold20G09130' => 'sas', 'SGA_v2.0_scaffold31G12822' => 'sas', 'SGA_v2.0_scaffold392G50679' => 'sas', 'SGA_v2.0_scaffold41G15773' => 'sas', 'SGA_v2.0_scaffold64G21928' => 'sas', 'SGA_v2.0_scaffold79G25632' => 'sas', 'SGA_v2.0_scaffold80G25895' => 'sas', 'SGA_v2.0_scaffold81G26093' => 'sas', 'SGA_v2.0_scaffold88G27280' => 'sas', 'SMO347G0441' => 'smo', 'SMO361G0660' => 'smo', 'SMO367G0505' => 'smo', 'Solyc01g006830.3' => 'sly', 'Solyc01g044556.1' => 'sly', 'Solyc01g097120.3' => 'sly', 'Solyc06g053780.4' => 'sly', 'Solyc06g066030.4' => 'sly', 'Solyc08g059800.3' => 'sly', 'Solyc09g083400.3' => 'sly', 'Solyc10g081730.2' => 'sly', 'Sopen01g002820' => 'spe', 'Sopen01g040800' => 'spe', 'Sopen06g018900' => 'spe', 'Sopen06g024510' => 'spe', 'Sopen08g015920' => 'spe', 'Sopen09g032320' => 'spe', 'Sopen10g032240' => 'spe', 'Sp2g20110' => 'spa', 'Sp3g03480' => 'spa', 'Sp3g20770' => 'spa', 'Sp4g04690' => 'spa', 'Sp4g18130' => 'spa', 'Sp6g04790' => 'spa', 'Sp7g30090' => 'spa', 'TAR362G1294' => 'tar', 'TAR365G0095' => 'tar', 'TAR365G0657' => 'tar', 'TAR369G0228' => 'tar', 'TAR369G0692' => 'tar', 'TAR376G0941' => 'tar', 'TAR383G0311' => 'tar', 'TAR623G1775' => 'tar', 'TAR625G1344' => 'tar', 'TAR626G0265' => 'tar', 'TAR626G1583' => 'tar', 'TAR633G0617' => 'tar', 'TAR636G0879' => 'tar', 'TAR636G1460' => 'tar', 'TAR636G1713' => 'tar', 'THA.LOC104799258' => 'tha', 'THA.LOC104802843' => 'tha', 'THA.LOC104803621' => 'tha', 'THA.LOC104803659' => 'tha', 'THA.LOC104803839' => 'tha', 'THA.LOC104804747' => 'tha', 'THA.LOC104805825' => 'tha', 'THA.LOC104808597' => 'tha', 'THA.LOC104815201' => 'tha', 'THA.LOC104818621' => 'tha', 'THA.LOC104823471' => 'tha', 'THA.LOC104823749' => 'tha', 'Thecc.04G246400' => 'tca', 'Thecc.05G108900' => 'tca', 'Thecc.05G280400' => 'tca', 'Thecc.09G025000' => 'tca', 'Thhalv10005603m.g' => 'esa', 'Thhalv10016634m.g' => 'esa', 'Thhalv10021164m.g' => 'esa', 'Thhalv10022180m.g' => 'esa', 'Thhalv10023556m.g' => 'esa', 'Thhalv10025240m.g' => 'esa', 'TPR.G15675' => 'tpr', 'TPR.G17781' => 'tpr', 'TPR.G21246' => 'tpr', 'TPR.G21822' => 'tpr', 'TPR.G27196' => 'tpr', 'TPR.G3101' => 'tpr', 'TPR.G34436' => 'tpr', 'TPR.G6941' => 'tpr', 'TWI09G1382' => 'twi', 'TWI32G1045' => 'twi', 'TWI34G1143' => 'twi', 'TWI53G0374' => 'twi', 'TWI53G1056' => 'twi', 'TWI63G0874' => 'twi', 'TWI74G0228' => 'twi', 'TWI74G0729' => 'twi', 'TWI77G0756' => 'twi', 'unitig_21.g20048' => 'ugi', 'unitig_22.g5153' => 'ugi', 'unitig_26.g9154' => 'ugi', 'unitig_746.g26848' => 'ugi', 'unitig_749.g14210' => 'ugi', 'unitig_8.g4301' => 'ugi', 'unitig_899.g14740' => 'ugi', 'vmacro05178' => 'vma', 'vmacro07492' => 'vma', 'vmacro08415' => 'vma', 'vmacro11171' => 'vma', 'vmacro11172' => 'vma', 'vmacro13817' => 'vma', 'VMungo0540G0031' => 'vmu', 'VMungo0647G1150' => 'vmu', 'VMungo0720G0778' => 'vmu', 'VMungo0720G1383' => 'vmu', 'VMungo0720G1760' => 'vmu', 'VMungo1309G1367' => 'vmu', 'VMungo1383G2391' => 'vmu', 'Zm00001eb061070' => 'zma', 'Zm00001eb114200' => 'zma', 'Zm00001eb116770' => 'zma', 'Zm00001eb167670' => 'zma', 'Zm00001eb181790' => 'zma', 'Zm00001eb200130' => 'zma', 'Zm00001eb205790' => 'zma', 'Zm00001eb212810' => 'zma', 'Zm00001eb235840' => 'zma', 'Zm00001eb276570' => 'zma', 'Zm00001eb301750' => 'zma', 'Zm00001eb333920' => 'zma', 'Zm00001eb364030' => 'zma', 'Zm00001eb386490' => 'zma' ) $gf_id = 'HOM05D000778' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000778' ) $data_identifier = 'HOM05D000778' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 28, 'bol' => (int) 12, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 14, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 6, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 12, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386490' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1